1. Ming Zhang, Juan Feng, Chun Xie, Nan Song, Chaozhi Jin, Jian Wang, Qun Zhao, Lihua Zhang, Boshuang Wang, Yidi Sun, Fei Guo, Yang Li*, Shujia Zhu*, Assembly and architecture of endogenous NMDA receptors in adult cerebral cortex and hippocampus. Cell, 2025, 188: 1-10.

2. Jing Chen, Hang Gao, Bowen Zhong, Zhou Gong, Chao Liu, Ao Zhang, Nan Zhao, Yuwen Chen, Baofeng Zhao, Zhen Liang, Yukui Zhang, Lihua Zhang*, Qun Zhao*, One-Step Enrichment and Quantitative Analysis of In Vivo Protein Complexes via Dimethylpiperidine Cross-Linker DPST, Angewandte Chemie-International Edition, 2025, e202501845.

3. Qi Yang#, Xinxin Liu#, Kaiguang Yang#, Peng Ge, Bowen Lan, Zhigang Sui, Yu Liang, Guixin Zhang, Hailong Chen*, Huiming Yuan*, Lihua Zhang*, Single-Step Negative Isolation and Concentration of Extracellular Vesicles by Graphene Oxide Composite Hydrogels. Chemical Engineering Journal, 2025, 513: 163066.  

4. Yue Sun, Dan Liu, Yu Liang*, Xue Yang, Xinxin Liu, Baofeng Zhao, Zhen Liang, Yukui Zhang, Lihua Zhang*, High-Throughput Proteoform Imaging for Revealing Spatial-Resolved Changes in Brain Tissues Associated with Alzheimer's Disease. Advanced Science, 2025, 12: 2416722.

5. Rui Sun, Yanan Huang, Huan Feng, Nan Zhao, Wang Wan, Di Shen, Bowen Zhong, Yukui Zhang, Xin Zhang, Qun Zhao*, Lihua Zhang*, Yu Liu*, 1000 fold Ultra-Photosensitized Fluorescent Protein Mimics Toward Photocatalytic Proximity Labeling and Proteomic Profiling Functions. Advanced Science, 2025, 2413063.

6. Di Shen#, Qun Zhao#, Huaiyue Zhang, Ci Wu, Hao Jin, Kun Guo, Rui Sun, Hengke Guo, Qi Zhao, Huan Feng, Xuepeng Dong, Zhenming Gao, Lihua Zhang*, Yu Liu*, A hydrophobic photouncaging reaction to profile the lipid droplet interactome in tissues. Proceedings of the National Academy of Sciences of the United States of America, 2025, 122, e2420861122.

7. Shiling Liu, Jingjing Hui, Huandi Li, Yijun Li, Xiwen He, Langxing Chen*, Yukui Zhang, Efficient removal of diclofenac sodium from aqueous environments by magnetic ionic covalent organic frameworks based on polydopamine: Adsorption performance and mechanism study. Separation and Purification Technology, 2025, 354: 129020.  

8. Yi Yang, Licheng Yu, Liang He, Pengli Bai*, Xiwen He, Langxing Chen*, Yukui Zhang, Non-tandem enzymatic modules-encapsulated metal-organic framework cubes with mutual-validated operation for dual-modal competitive immunoassay of antibiotics. Sensors and Actuators: B. Chemical, 2025, 427: 137160.

9. He Wang#, Xiaoyu Zhang#, Dongdong Wang, Qianqian Jiang, Yue Sun, Baofeng Zhao, Zhen Liang, Yukui Zhang, Guangyan Qing*, Bo Jiang*, Lihua Zhang, Affinity peptide ligands: New tools for chasing non-canonical N-phosphoproteome. Chemical Science, 2025.

10. Xiaoyu Zhang#, Bowen Zhong#, Yue Sun, Dan Liu, Xiancheng Zhang, Dongdong Wang, Cunli Wang, Huiling Gao, Manli Zhong, Haijuan Qin, Yang Chen, Zhiying Yang, Yan Li, Haijie Wei, Xindi Yang, Yukui Zhang, Bo Jiang*, Lihua Zhang*, Guangyan Qing*, Deciphering the endogenous SUMO-1 landscape: a novel combinatorial peptide enrichment strategy for global profiling and disease association. Chemical Science, 2025, 16: 2634-2647.

11. Jiaqi Wang#, Ronggang Xi#, Yi Wang, Huiyuan Gao*, Ming Gao*, Xiaozhe Zhang*, Lihua Zhang, Yukui Zhang, Toward molecular diagnosis of major depressive disorder by plasma peptides using a deep learning approach. Briefings in Bioinformatics, 2025, 26: bbae554.

12. Beirong Zhang, Zhou Gong, Bowen Zhong, Zhen Liang, Yukui Zhang, Qun Zhao*, Lihua Zhang, Ultrafiltration-Enhanced Cross-Linking Mass Spectrometry for Comprehensive Analysis of Low Molecular Weight Protein Cross-links. Analytical Chemistry, 2025, 97: 9606−9612.

13. Mingwei Sun#, Zichun Qiao#, Shuxian Wei, Zhen Liang, Lihua Zhang*, Bo Jiang*, Yukui Zhang, Global Methylation Profiling by Selective Release of Methylated Sites from Immobilized Tryptic Peptides. Analytical chemistry, 2025, 97: 9620-9626.

14. Yuwen Chen^#, Zhiying Li^#, Yongbao Mao, Hui Pan, Zhen Liang, Yukui Zhang, Qun Zhao*,  Lihua Zhang*. Microenvironment-Specific Enrichment Strategy Enables Lysosomal Proteomic Dynamics Analysis. Analytical Chemistry, 2025, 97: 3495-3503.

15. Yi Yang, Licheng Yu, Liang He, Pengli Bai*, Xiwen He, Langxing Chen*, Yukui Zhang, Bioinspired Spatial Compartment of Substrate Molecules and Catalytic Counting Entities in Hierarchical MOFs Initiated for a Dual Mode Glycoprotein Assay. Analytical Chemistry, 2024, 96: 20674-20683.

16. Mingwei Sun#, Shuxian Wei#, Yang Li#, Zichun Qiao, Zhen Liang, Yichu Shan, Yukui Zhang, Jiang Bo*, Lihua Zhang*，Utilizing a Negative Enrichment Strategy ot Profile Protein Methylation, Leveraging the Orthogonality of LysargiNase and Trypsin. Molecular&Cellular Proteomics, 2025, 97: 9620-9626.

17. Hao Chen, Fan Tan, Yukui Zhang, Bingteng Xie*, Aiqin Luo*, Enhancing PARP inhibitor efficacy using reduction-responsive nanoparticles encapsulating NADP. Journal of Materials Chemistry B, 2025, 13: 955.

18. Hui Pan, Qun Zhao, Yu Xia, Baofeng Zhao, Bo Jiang*, Zhen Liang, Lihua Zhang*, Yukui Zhang, Ligand guided in vivo crosslinking and affinity purification mass spectrometry for identifying membrane receptors of Tau. Talanta, 2025, 287: 127655.

19. Zhiting Wang, Songduo Wang, Xinxin Liu, Huixia Shi, Weijie Zhang, Zhiyuan Yang, Lei Feng, Anquan Ji, Zhen Liang, Jianhui Liu*, Lihua Zhang, Yukui Zhang, Discovery of specific protein markers in multiple body fluids and their application in forensic science. Talanta, 2025, 293: 128032.

20. Zichun Qiao, Min Sun, Zhou Gong, Xiao Li, Zhen Liang, Yukui Zhang, Qun Zhao*, Lihua Zhang*, A comprehensive investigation of the impact of cross-linker backbone structure on protein dynamics analysis: A case study with Pin1. Talanta, 2025, 286: 127480.

21. Yi Wang, Dongcao Xu, Xinxin Liu, Mengchun Cheng, Jingsong Huang, Dan Liu*, Xiaozhe Zhang*, Lihua Zhang, Discovery of potential female-specific biomarkers for major depressive disorder by LC–MS-based metabolomics. Journal of Pharmaceutical and Biomedical Analysis, 2025, 254: 116572.